SubMorphology class¶
(Shortest import: from brian2.spatialneuron.morphology import SubMorphology)
- class brian2.spatialneuron.morphology.SubMorphology(morphology, i, j)[source]¶
Bases:
object
A view on a subset of a section in a morphology.
Attributes
The membrane surface area of each compartment in this sub-section.
The diameter at the middle of each compartment in this sub-section.
The total distance between the midpoint of each compartment in this sub-section and the root of the morphology.
The x coordinate at the end of each compartment in this sub-section.
The x coordinate (as a unitless floating point number) at the end of each compartment in this sub-section.
The y coordinate at the end of each compartment in this sub-section.
The y coordinate (as a unitless floating point number) at the end of each compartment in this sub-section.
The z coordinate at the end of each compartment in this sub-section.
The z coordinate (as a unitless floating point number) at the end of each compartment in this sub-section.
The length of each compartment in this sub-section.
The number of compartments in this sub-section.
The number of sections in this sub-section (always 1).
The geometry-dependent term to calculate the conductance between the start and the midpoint of each compartment in this sub-section.
The geometry-dependent term to calculate the conductance between the midpoint and the end of each compartment in this sub-section.
The x coordinate at the beginning of each compartment in this sub-section.
The x coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section.
The y coordinate at the beginning of each compartment in this sub-section.
The y coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section.
The x coordinate at the beginning of each compartment in this sub-section.
The z coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section.
The volume of each compartment in this sub-section.
The x coordinate at the midpoint of each compartment in this sub-section.
The x coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section.
The y coordinate at the midpoint of each compartment in this sub-section.
The y coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section.
The z coordinate at the midpoint of each compartment in this sub-section.
The z coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section.
Details
- area¶
The membrane surface area of each compartment in this sub-section.
- diameter¶
The diameter at the middle of each compartment in this sub-section.
- distance¶
The total distance between the midpoint of each compartment in this sub-section and the root of the morphology.
- end_x¶
The x coordinate at the end of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- end_x_¶
The x coordinate (as a unitless floating point number) at the end of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- end_y¶
The y coordinate at the end of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- end_y_¶
The y coordinate (as a unitless floating point number) at the end of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- end_z¶
The z coordinate at the end of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- end_z_¶
The z coordinate (as a unitless floating point number) at the end of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- length¶
The length of each compartment in this sub-section.
- n¶
The number of compartments in this sub-section.
- n_sections¶
The number of sections in this sub-section (always 1).
- r_length_1¶
The geometry-dependent term to calculate the conductance between the start and the midpoint of each compartment in this sub-section. Dividing this value by the Intracellular resistivity gives the conductance.
- r_length_2¶
The geometry-dependent term to calculate the conductance between the midpoint and the end of each compartment in this sub-section. Dividing this value by the Intracellular resistivity gives the conductance.
- start_x¶
The x coordinate at the beginning of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- start_x_¶
The x coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- start_y¶
The y coordinate at the beginning of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- start_y_¶
The y coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- start_z¶
The x coordinate at the beginning of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- start_z_¶
The z coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- volume¶
The volume of each compartment in this sub-section.
- x¶
The x coordinate at the midpoint of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- x_¶
The x coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- y¶
The y coordinate at the midpoint of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- y_¶
The y coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- z¶
The z coordinate at the midpoint of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
- z_¶
The z coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section. Returns
None
for morphologies without coordinates.