SubMorphology class¶
(Shortest import: from brian2.spatialneuron.morphology import SubMorphology)
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class
brian2.spatialneuron.morphology.
SubMorphology
(morphology, i, j)[source]¶ Bases:
object
A view on a subset of a section in a morphology.
Attributes
area
The membrane surface area of each compartment in this sub-section. diameter
The diameter at the middle of each compartment in this sub-section. distance
The total distance between the midpoint of each compartment in this sub-section and the root of the morphology. end_x
The x coordinate at the end of each compartment in this sub-section. end_x_
The x coordinate (as a unitless floating point number) at the end of each compartment in this sub-section. end_y
The y coordinate at the end of each compartment in this sub-section. end_y_
The y coordinate (as a unitless floating point number) at the end of each compartment in this sub-section. end_z
The z coordinate at the end of each compartment in this sub-section. end_z_
The z coordinate (as a unitless floating point number) at the end of each compartment in this sub-section. length
The length of each compartment in this sub-section. n
The number of compartments in this sub-section. n_sections
The number of sections in this sub-section (always 1). r_length_1
The geometry-dependent term to calculate the conductance between the start and the midpoint of each compartment in this sub-section. r_length_2
The geometry-dependent term to calculate the conductance between the midpoint and the end of each compartment in this sub-section. start_x
The x coordinate at the beginning of each compartment in this sub-section. start_x_
The x coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section. start_y
The y coordinate at the beginning of each compartment in this sub-section. start_y_
The y coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section. start_z
The x coordinate at the beginning of each compartment in this sub-section. start_z_
The z coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section. volume
The volume of each compartment in this sub-section. x
The x coordinate at the midpoint of each compartment in this sub-section. x_
The x coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section. y
The y coordinate at the midpoint of each compartment in this sub-section. y_
The y coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section. z
The z coordinate at the midpoint of each compartment in this sub-section. z_
The z coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section. Details
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area
¶ The membrane surface area of each compartment in this sub-section.
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diameter
¶ The diameter at the middle of each compartment in this sub-section.
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distance
¶ The total distance between the midpoint of each compartment in this sub-section and the root of the morphology.
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end_x
¶ The x coordinate at the end of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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end_x_
¶ The x coordinate (as a unitless floating point number) at the end of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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end_y
¶ The y coordinate at the end of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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end_y_
¶ The y coordinate (as a unitless floating point number) at the end of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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end_z
¶ The z coordinate at the end of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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end_z_
¶ The z coordinate (as a unitless floating point number) at the end of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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length
¶ The length of each compartment in this sub-section.
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n
¶ The number of compartments in this sub-section.
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n_sections
¶ The number of sections in this sub-section (always 1).
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r_length_1
¶ The geometry-dependent term to calculate the conductance between the start and the midpoint of each compartment in this sub-section. Dividing this value by the Intracellular resistivity gives the conductance.
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r_length_2
¶ The geometry-dependent term to calculate the conductance between the midpoint and the end of each compartment in this sub-section. Dividing this value by the Intracellular resistivity gives the conductance.
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start_x
¶ The x coordinate at the beginning of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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start_x_
¶ The x coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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start_y
¶ The y coordinate at the beginning of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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start_y_
¶ The y coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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start_z
¶ The x coordinate at the beginning of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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start_z_
¶ The z coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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volume
¶ The volume of each compartment in this sub-section.
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x
¶ The x coordinate at the midpoint of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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x_
¶ The x coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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y
¶ The y coordinate at the midpoint of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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y_
¶ The y coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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z
¶ The z coordinate at the midpoint of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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z_
¶ The z coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section. Returns
None
for morphologies without coordinates.
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