spatialneuron package

morphology module

Neuronal morphology module. This module defines classes to load and build neuronal morphologies.

Exported members: Morphology, Section, Cylinder, Soma

Classes

Children(owner)

Helper class to represent the children (sub trees) of a section.

Cylinder(*args, **kwds)

A cylindrical section.

Morphology(*args, **kwds)

Neuronal morphology (tree structure).

MorphologyIndexWrapper(morphology)

A simpler version of IndexWrapper, not allowing for string indexing (Morphology is not a Group).

Node	Attributes

Section(*args, **kwds)

A section (unbranched structure), described as a sequence of truncated cones with potentially varying diameters and lengths per compartment.

Soma(*args, **kwds)

A spherical, iso-potential soma.

SubMorphology(morphology, i, j)

A view on a subset of a section in a morphology.

Topology(morphology)

A representation of the topology of a Morphology.

spatialneuron module

Compartmental models. This module defines the SpatialNeuron class, which defines multicompartmental models.

Exported members: SpatialNeuron

Classes

FlatMorphology(morphology)

Container object to store the flattened representation of a morphology.

SpatialNeuron([morphology, model, ...])

A single neuron with a morphology and possibly many compartments.

SpatialStateUpdater(group, method, clock[, ...])

The CodeRunner that updates the state variables of a SpatialNeuron at every timestep.

SpatialSubgroup(source, start, stop, morphology)

A subgroup of a SpatialNeuron.