spatialneuron package¶
morphology
module¶
Neuronal morphology module. This module defines classes to load and build neuronal morphologies.
Exported members:
Morphology
, Section
, Cylinder
, Soma
Classes
Children (owner) |
Helper class to represent the children (sub trees) of a section. |
Cylinder (*args, **kwds) |
A cylindrical section. |
Morphology (*args, **kwds) |
Neuronal morphology (tree structure). |
MorphologyIndexWrapper (morphology) |
A simpler version of IndexWrapper , not allowing for string indexing (Morphology is not a Group ). |
Node |
Attributes |
Section (*args, **kwds) |
A section (unbranched structure), described as a sequence of truncated cones with potentially varying diameters and lengths per compartment. |
Soma (*args, **kwds) |
A spherical, iso-potential soma. |
SubMorphology (morphology, i, j) |
A view on a subset of a section in a morphology. |
Topology (morphology) |
A representation of the topology of a Morphology . |
spatialneuron
module¶
Compartmental models. This module defines the SpatialNeuron class, which defines multicompartmental models.
Exported members:
SpatialNeuron
Classes
FlatMorphology (morphology) |
Container object to store the flattened representation of a morphology. |
SpatialNeuron ([morphology, model, ...]) |
A single neuron with a morphology and possibly many compartments. |
SpatialStateUpdater (group, method, clock[, ...]) |
The CodeRunner that updates the state variables of a SpatialNeuron at every timestep. |
SpatialSubgroup (source, start, stop, morphology) |
A subgroup of a SpatialNeuron . |